Cytoscape (Network)

Biological / knowledge networks with force-directed, circular, breadth-first layouts. Edge styling, node colouring, large-graph rendering.

Templates

240

Source language

json

Workstation

Studio

Engine id

cytoscape

Open in Studio Upstream docs

In the same space

Most users come to Cytoscape (Network) from Cytoscape Desktop or Gephi (web). Glyph runs this engine in the browser — no install, shareable via URL, exportable to PNG / SVG / PDF / source.

Syntax at a glance

{"elements":[{"data":{"id":"a"}},{"data":{"id":"b"}},{"data":{"source":"a","target":"b"}}],"layout":{"name":"cose"}}

Paste this in the Studio code pane to see Cytoscape (Network) render live. The full grammar is at the upstream-docs link above.

Sample templates

All 240 →

bio

Gene Interaction Network

Interactive force-directed gene/protein interaction network.

research

Citation Network

Paper-to-paper citation graph.

data

Social Network

Concentric layout social/collaboration graph.

bio

Ecological Food Web

Trophic network with producers, herbivores, and predators.

data

Ontology Hierarchy

Concept hierarchy / ontology with concentric layout.

research

Social Network — Friendship Graph

Force-directed social network with degree-coloured nodes.

Engine reference: cytoscape · ← Browse all engines · Quick-start guide